Giovanni Bussi: search on Z-Library

The world's largest scientific articles store. 70,000,000+ articles for free.

1

Using metadynamics to explore complex free-energy landscapes

Bussi, Giovanni, Laio, Alessandro

Journal:

Nature Reviews Physics

Year:

2020

Language:

english

File:

PDF, 3.69 MB

english, 2020

2

Well-Tempered Metadynamics: A Smoothly Converging and Tunable Free-Energy Method

Barducci, Alessandro, Bussi, Giovanni, Parrinello, Michele

Journal:

Physical Review Letters

Year:

2008

Language:

english

File:

PDF, 1.11 MB

english, 2008

3

Equilibrium Free Energies from Nonequilibrium Metadynamics

Bussi, Giovanni, Laio, Alessandro, Parrinello, Michele

Journal:

Physical Review Letters

Year:

2006

Language:

english

File:

PDF, 118 KB

english, 2006

4

RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview

Šponer, Jiří, Bussi, Giovanni, Krepl, Miroslav, Banáš, Pavel, Bottaro, Sandro, Cunha, Richard A., Gil-Ley, Alejandro, Pinamonti, Giovanni, Poblete, Simón, Jurečka, Petr, Walter, Nils G., Otyepka, Mich

Journal:

Chemical Reviews

Year:

2018

Language:

english

File:

PDF, 77.37 MB

english, 2018

5

Bowl Inversion of Surface-Adsorbed Sumanene

Jaafar, Rached, Pignedoli, Carlo A., Bussi, Giovanni, Aït-Mansour, Kamel, Groening, Oliver, Amaya, Toru, Hirao, Toshikazu, Fasel, Roman, Ruffieux, Pascal

Journal:

Journal of the American Chemical Society

Year:

2014

Language:

english

File:

PDF, 2.07 MB

english, 2014

6

Nuclear Quantum Effects in Solids Using a Colored-Noise Thermostat

Ceriotti, Michele, Bussi, Giovanni, Parrinello, Michele

Journal:

Physical Review Letters

Year:

2009

Language:

english

File:

PDF, 249 KB

english, 2009

7

Canonical sampling through velocity rescaling

Bussi, Giovanni, Donadio, Davide, Parrinello, Michele

Journal:

The Journal of Chemical Physics

Year:

2007

Language:

english

File:

PDF, 455 KB

english, 2007

8

Langevin Equation with Colored Noise for Constant-Temperature Molecular Dynamics Simulations

Ceriotti, Michele, Bussi, Giovanni, Parrinello, Michele

Journal:

Physical Review Letters

Year:

2009

Language:

english

File:

PDF, 306 KB

english, 2009

9

Conformational ensembles of RNA oligonucleotides from integrating NMR and molecular simulations

Bottaro, Sandro, Bussi, Giovanni, Kennedy, Scott D., Turner, Douglas H., Lindorff-Larsen, Kresten

Journal:

Science Advances

Year:

2018

Language:

english

File:

PDF, 1.03 MB

english, 2018

10

Colored-Noise Thermostats à la Carte

Ceriotti, Michele, Bussi, Giovanni, Parrinello, Michele

Journal:

Journal of Chemical Theory and Computation

Year:

2010

Language:

english

File:

PDF, 1.24 MB

english, 2010

11

Accurate sampling using Langevin dynamics

Bussi, Giovanni, Parrinello, Michele

Journal:

Physical Review E

Year:

2007

Language:

english

File:

PDF, 300 KB

english, 2007

12

Hamiltonian replica exchange in GROMACS: a flexible implementation

Bussi, Giovanni

Journal:

Molecular Physics

Year:

2014

Language:

english

File:

PDF, 1.40 MB

english, 2014

13

Results of hypofractionated stereotactic re-irradiation on 13 locally recurrent nasopharyngeal carcinomas

Roberto Orecchia, Maria Grazia Ruo Redda, Riccardo Ragona, Daniela Nassisi, Barbara Jereczek-Fossa, Stefano Zurrida, Mario Bussi, Giovanni Succo, GianLuca Sannazzari

Journal:

Radiotherapy and Oncology

Year:

1999

Language:

english

File:

PDF, 84 KB

english, 1999

14

Barnaba: Software for Analysis of Nucleic Acids Structures and Trajectories

Bottaro, Sandro, Bussi, Giovanni, Pinamonti, Giovanni, Reißer, Sabine, Boomsma, Wouter, Lindorff-Larsen, Kresten

Journal:

Year:

2018

Language:

english

File:

PDF, 4.72 MB

english, 2018

15

The IXV Ground Segment design, implementation and operations

Martucci di Scarfizzi, Giovanni, Bellomo, Alessandro, Musso, Ivano, Bussi, Diego, Rabaioli, Massimo, Santoro, Gianfranco, Billig, Gerhard, Gallego Sanz, José María

Journal:

Acta Astronautica

Year:

2015

Language:

english

File:

PDF, 4.54 MB

english, 2015

16

Combining Simulations and Solution Experiments as a Paradigm for RNA Force Field Refinement

Cesari, Andrea, Gil-Ley, Alejandro, Bussi, Giovanni

Journal:

Journal of Chemical Theory and Computation

Year:

2016

Language:

english

File:

PDF, 1.11 MB

english, 2016

17

Predicting the Kinetics of RNA Oligonucleotides Using Markov State Models

Pinamonti, Giovanni, Zhao, Jianbo, Condon, David E., Paul, Fabian, Noè, Frank, Turner, Douglas H., Bussi, Giovanni

Journal:

Journal of Chemical Theory and Computation

Year:

2017

Language:

english

File:

PDF, 1.71 MB

english, 2017

18

Production of Leukocyte Migration Inhibition Factor by Lymphocytes of Larynx Cancer Patients Stimulated by Laryngeal Carcinoma Solubilized Membrane Antigens

Cortesina, Giorgio, Cavallo, Giovanni Patrick, Beatrice, Fabio, Sartoris, Alberto, Bussi, Mario, Morra, Bruno, Di Fortunato, Valerio, Poggio, Ester, Rendine, Sabina

Journal:

Year:

1982

Language:

english

File:

PDF, 885 KB

english, 1982

19

schemes

Ferretti, Andrea, Mallia, Giuseppe, Martin-Samos, Layla, Bussi, Giovanni, Ruini, Alice, Montanari, Barbara, Harrison, Nicholas M.

Journal:

Physical Review B

Year:

2012

Language:

english

File:

PDF, 1.08 MB

english, 2012

20

Interchain interaction and Davydov splitting in polythiophene crystals: An ab initio approach

Bussi, Giovanni, Ruini, Alice, Molinari, Elisa, Caldas, Marilia J., Puschnig, Peter, Ambrosch-Draxl, Claudia

Journal:

Applied Physics Letters

Year:

2002

Language:

english

File:

PDF, 315 KB

english, 2002

21

RNA Conformational Fluctuations from Elastic Network Models: A Comparison with Molecular Dynamics and Shape Experiments

Pinamonti, Giovanni, Bottaro, Sandro, Micheletti, Cristian, Bussi, Giovanni

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 42 KB

english, 2016

22

RNA Conformational Ensembles: Narrowing the GAP between Experiments and Simulations with Metadynamics

Gil-Ley, Alejandro, Bottaro, Sandro, Bussi, Giovanni

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 53 KB

english, 2016

23

Unraveling Mg 2+ –RNA binding with atomistic molecular dynamics

Cunha, Richard A., Bussi, Giovanni

Journal:

Year:

2017

Language:

english

File:

PDF, 2.06 MB

english, 2017

24

Fine-tuning of the AMBER RNA Force Field with a New Term Adjusting Interactions of Terminal Nucleotides

Mlynsky, Vojtech, KÃ¼hrovÃ¡, Petra, KÃ¼hr, TomÃ¡Å¡, Otyepka, Michal, Bussi, Giovanni, BanÃ¡Å¡, Pavel, Sponer, Jiri

Journal:

Journal of Chemical Theory and Computation

Year:

2020

File:

PDF, 1.87 MB

2020

25

Reactive force field simulation of proton diffusion in BaZrO 3 using an empirical valence bond approach

Raiteri, Paolo, Gale, Julian D, Bussi, Giovanni

Journal:

Journal of Physics Condensed Matter

Year:

2011

Language:

english

File:

PDF, 1.37 MB

english, 2011

26

Exploring RNA structure and dynamics through enhanced sampling simulations

Mlýnský, Vojtěch, Bussi, Giovanni

Journal:

Current Opinion in Structural Biology

Year:

2018

Language:

english

File:

PDF, 791 KB

english, 2018

27

First-principles approach for the calculation of optical properties of one-dimensional systems with helical symmetry: The case of carbon nanotubes

Chang, Eric, Bussi, Giovanni, Ruini, Alice, Molinari, Elisa

Journal:

Physical Review B

Year:

2005

Language:

english

File:

PDF, 485 KB

english, 2005

28

Enhanced Conformational Sampling Using Replica Exchange with Collective-Variable Tempering

Gil-Ley, Alejandro, Bussi, Giovanni

Journal:

Journal of Chemical Theory and Computation

Year:

2015

Language:

english

File:

PDF, 1.92 MB

english, 2015

29

Molecular Simulations Reveal an Interplay Between SHAPE Reagent Binding and RNA Flexibilty

Mlynsky, Vojtech, Bussi, Giovanni

Journal:

The Journal of Physical Chemistry Letters

Year:

2017

Language:

english

File:

PDF, 3.46 MB

english, 2017

30

Structural Role of Uracil DNA Glycosylase for the Recognition of Uracil in DNA Duplexes. Clues from Atomistic Simulations

Franco, Duvan, Sgrignani, Jacopo, Bussi, Giovanni, Magistrato, Alessandra

Journal:

Journal of Chemical Information and Modeling

Year:

2013

Language:

english

File:

PDF, 1.40 MB

english, 2013

31

RNA Unwinding from Reweighted Pulling Simulations

Colizzi, Francesco, Bussi, Giovanni

Journal:

Journal of the American Chemical Society

Year:

2012

Language:

english

File:

PDF, 3.18 MB

english, 2012

32

Accurate Multiple Time Step in Biased Molecular Simulations

Ferrarotti, Marco Jacopo, Bottaro, Sandro, Pérez-Villa, Andrea, Bussi, Giovanni

Journal:

Journal of Chemical Theory and Computation

Year:

2015

Language:

english

File:

PDF, 601 KB

english, 2015

33

Correction to Enhanced Conformational Sampling Using Replica Exchange with Collective-Variable Tempering

Gil-Ley, Alejandro, Bussi, Giovanni

Journal:

Journal of Chemical Theory and Computation

Year:

2015

Language:

english

File:

PDF, 321 KB

english, 2015

34

Toward empirical force fields that match experimental observables

FrÃ¶hlking, Thorben, Bernetti, Mattia, Calonaci, Nicola, Bussi, Giovanni

Journal:

The Journal of Chemical Physics

Year:

2020

File:

PDF, 1.79 MB

2020

35

Elastic network models for RNA: a comparative assessment with molecular dynamics and SHAPE experiments

Pinamonti, Giovanni, Bottaro, Sandro, Micheletti, Cristian, Bussi, Giovanni

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.95 MB

english, 2015

36

Determination of Structural Ensembles of Proteins: Restraining vs Reweighting

Rangan, Ramya, Bonomi, Massimiliano, Heller, Gabriella T., Cesari, Andrea, Bussi, Giovanni, Vendruscolo, Michele

Journal:

Journal of Chemical Theory and Computation

Year:

2018

Language:

english

File:

PDF, 11.10 MB

english, 2018

37

Assessing the accuracy of direct-coupling analysis for RNA contact prediction

Cuturello, Francesca, Tiana, Guido, Bussi, Giovanni

Journal:

Year:

2020

Language:

english

File:

PDF, 4.93 MB

english, 2020

38

Unravelling the Shuttling Mechanism in a Photoswitchable Multicomponent Bistable Rotaxane

Paolo Raiteri, Giovanni Bussi, Clotilde S. Cucinotta, Alberto Credi, J. Fraser Stoddart, Michele Parrinello

Journal:

Angewandte Chemie International Edition

Year:

2008

Language:

english

File:

PDF, 692 KB

english, 2008

39

Metadynamics with Adaptive Gaussians

Branduardi, Davide, Bussi, Giovanni, Parrinello, Michele

Journal:

Journal of Chemical Theory and Computation

Year:

2012

Language:

english

File:

PDF, 2.31 MB

english, 2012

40

Ensemble of Transition State Structures for the Cis−Trans Isomerization of N -Methylacetamide

Mantz, Yves A., Branduardi, Davide, Bussi, Giovanni, Parrinello, Michele

Journal:

Journal of Physical Chemistry B

Year:

2009

Language:

english

File:

PDF, 464 KB

english, 2009

41

Excitons in Carbon Nanotubes: An Ab Initio Symmetry-Based Approach

Chang, Eric, Bussi, Giovanni, Ruini, Alice, Molinari, Elisa

Journal:

Physical Review Letters

Year:

2004

Language:

english

File:

PDF, 351 KB

english, 2004

42

PLUMED 2: New feathers for an old bird

Tribello, Gareth A., Bonomi, Massimiliano, Branduardi, Davide, Camilloni, Carlo, Bussi, Giovanni

Journal:

Computer Physics Communications

Year:

2014

Language:

english

File:

PDF, 1.06 MB

english, 2014

43

Strain-induced polar discontinuities in two-dimensional materials from combined first-principles and Schrödinger-Poisson simulations

Bussy, Augustin, Pizzi, Giovanni, Gibertini, Marco

Journal:

Physical Review B

Year:

2017

Language:

english

File:

PDF, 1005 KB

english, 2017

44

Effects of the Electron?Hole Interaction on the Optical Properties of Materials: the Bethe?Salpeter Equation

Bussi, Giovanni

Journal:

Physica Scripta

Year:

2004

Language:

english

File:

PDF, 379 KB

english, 2004

45

Routine quality care assessment of schizophrenic disorders using information systems

Lora, Antonio, Monzani, Emiliano, Ibrahim, Bussy, Soranna, Davide, Corrao, Giovanni

Journal:

International Journal for Quality in Health Care

Year:

2018

File:

PDF, 115 KB

2018

46

Trans−cis Switching Mechanisms in Proline Analogues and Their Relevance for the Gating of the 5-HT 3 Receptor

Melis, Claudio, Bussi, Giovanni, Lummis, Sarah C. R., Molteni, Carla

Journal:

Journal of Physical Chemistry B

Year:

2009

Language:

english

File:

PDF, 2.67 MB

english, 2009

47

[AIP PHYSICS OF SEMICONDUCTORS: 27th International Conference on the Physics of Semiconductors - ICPS-27 - Flagstaff, Arizona (USA) (26-30 July 2004)] AIP Conference Proceedings - A symmetrized-basis approach to excitons in carbon nanotubes

Bussi, Giovanni

Year:

2005

Language:

english

File:

PDF, 288 KB

english, 2005

48

Relationship between structural and optoelectronic properties in semiconducting polymers

Ruini, Alice, Ferretti, Andrea, Bussi, Giovanni, Molinari, Elisa, Caldas, Marilia J

Journal:

Semiconductor Science and Technology

Year:

2004

Language:

english

File:

PDF, 122 KB

english, 2004

49

Kissing loop interaction in adenine riboswitch: insights from umbrella sampling simulations

Di Palma, Francesco, Bottaro, Sandro, Bussi, Giovanni

Journal:

BMC Bioinformatics

Year:

2015

Language:

english

File:

PDF, 2.16 MB

english, 2015

50

RNA folding pathways in stop motion

Bottaro, Sandro, Gil-Ley, Alejandro, Bussi, Giovanni

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 1.61 MB

english, 2016

To build up a library is to create a life. It’s never just a random collection of books.

— Carlos María Domínguez

Official channel

Z-Library Desktop Launcher

Z-Library Since 2009 support@1delivery.pm

EnglishРусскийEspañolItalianoελληνικάاللغة العربيةBahasa IndonesiaBahasa Malaysiaहिन्दीDeutschFrançaisPortuguêsУкраїнськаPolski中文繁體中文日本語Tiếng ViệtAzərbaycan DiliՀայոց լեզուภาษาไทยTürk Diliქართველიবাংলাپښتوతెలుగుاردو한국어SrpskiБългарски